ch. 11. Mathematical modeling of the evolution of domain composition of proteomes: a birth-and-death process with innovation / Georgy P. Karev ... [et al.]. ch. 2. Sensitive protein alignment algorithms / Adam Godzik -- ch. 3. Measuring generality of knowledge-based potentials extracted from protein structure sets / Frank Eisenhaber ... [et al.] -- ch. 4. Protein structure modeling in functional genomics / Jürgen Kopp, Manuel C. Peitsch, and Torsten Schwede -- ch. 5. Identifying domains, repeats and motifs from protein sequences / Chris P. Ponting and Alex Bateman -- ch. 6. Exploiting the variations in the genomic associations of genes to predict pathways and reconstruct their evolution / Martijn A. Huynen and Berend Snel -- ch. 7. Using genomic context in the analysis of multi-component systems / Natalie D. Federova, Anastasia N. Nikolskaya, and Michael Y. Galperin -- ch. 8. Prolegomena to the evolution of transcriptional regulation in bacterial genomes / Mikhail S. Gelfand and Olga N. Laikova -- ch. 9. Experimental Rnomics / Alexander Hüttenhofer and Jürgen Brosius -- ch. 10. Genome-scale phylogenetic trees / Yuri I. Wolf, Igor B. Rogozin, Nick V. Grishin, and Eugene V. Koonin -- ch. 11. Mathematical modeling of the evolution of domain composition of proteomes: a birth-and-death process with innovation / Georgy P. Karev ... [et al.].
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