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Title:

Data mining for systems biology : methods and protocols / edited by Hiroshi Mamitsuka, Charles DeLisi, Minoru Kanehisa.

Publisher:

Humana Press ;

Copyright Date:

c2013

Description:

xii, 279 p. : ill. (some col.) ; 27 cm.

Subject:

Systems Biology--methods--Laboratory Manuals.
Data Mining--methods--Laboratory Manuals.
Sequence Analysis--methods--Laboratory Manuals.
Systems biology--Methodology.
Data mining.

Other Authors:

Mamitsuka, Hiroshi.
DeLisi, Charles, 1941-
Kanehisa, Minoru.

Notes:

Includes bibliographical references and index.

Contents:

Dense module enumeration in biological networks / Koji Tsuda and Elisabeth Georgii -- Discovering interacting domains and motifs in protein-protein interactions / Willy Hugo, Wing-Kin Sung, and See-Kiong Ng -- Global alignment of protein-protein interaction networks / Misael Mongiovı and Roded Sharan -- Structure learning for Bayesian networks as models of biological networks / Antti Larjo, Ilya Shmulevich, and Harri Lahdesmaki -- Supervised inference of gene regulatory networks from positive and unlabeled examples / Fantine Mordelet and Jean-Philippe Vert -- Mining regulatory network connections by ranking transcription factor target genes using time series expression data / Antti Honkela, Magnus Rattray, and Neil D. Lawrence -- Identifying pathways of coordinated gene expression / Timothy Hancock, Ichigaku Takigawa, and Hiroshi Mamitsuka -- Mining frequent subtrees in glycan data using the rings glycan miner tool / Kiyoko Flora Aoki-Kinoshita -- Chemogenomic approaches to infer drug-target interaction networks / Yoshihiro Yamanishi -- Localization prediction and structure-based in silico analysis of bacterial proteins : with emphasis on outer membrane proteins / Kenichiro Imai ... [et al.] -- Analysis strategy of protein-protein interaction networks / Zhenjun Hu -- Data mining in the metacyc family of pathway databases / Peter D. Karp, Suzanne Paley, and Tomer Altman -- Gene set/pathway enrichment analysis / Jui-Hung Hung -- Construction of functional linkage gene networks by data integration / Bolan Linghu, Eric A. Franzosa, and Yu Xia -- Genome-wide association studies / Tun-Hsiang Yang, Mark Kon, and Charles DeLisi -- Viral genome analysis and knowledge management / Carla Kuiken ... [et al.] -- Molecular network analysis of diseases and drugs in KEGG / Minoru Kanehisa.

Series:

Methods in molecular biology, 1064-3745 ; 939
Springer protocols

ISBN:

1627031065 (alk. paper)
9781627031066 (alk. paper)

OCLC:

(OCoLC)794709657

LCCN:

2012947383

Locations:

OVUX522 -- University of Iowa Libraries (Iowa City)