Processing and analyzing human microbiome data / Xuan Zhu, Jian Wang, Cielito Reyes-Gibby, and Sanjay Shete. Identification of genotype errors / Jeffery O'Connell and Yin Yao -- Detecting pedigree relationship errors / Lei Sun -- Identifying cryptic relationships / Lei Sun, Apostolos Dimitromanolakis, and Wei-Min Chen -- Estimating allele frequencies / Indra Adrianto and Courtney Montgomery -- Testing departure from hardy-weinberg proportions / Jian Wang and Sanjay Shete -- Estimating disequilibrium coefficients / Maren Vens and Andreas Ziegler -- Detecting familial aggregation / Adam C. Naj and Terri H. Beaty -- Estimating heritability from twin studies / Katrina L. Grasby, Karin J.H. Verweij, Miriam A. Mosing, Brendan P. Zietsch, and Sarah E. Medland -- Estimating heritability from nuclear family and pedigree data / Murielle Bochud -- Correcting for ascertainment / Warren Ewens and Robert C. Elston -- Segregation analysis using the unified model / Xiangqing Sun -- Design considerations for genetic linkage and association studies / Jeremie Nsengimana and D. Timothy Bishop -- Model-based linkage analysis of a quantitative trait / Yeunjoo E. Song, Sunah Song, and Audrey H. Schnell -- Model-based linkage analysis of a binary trait / Rita M. Cantor -- Model-free linkage analysis of a quantitative trait / Nathan J. Morris and Catherine M. Stein -- Model-free linkage analysis of a binary trait / Wei Xu, Jin Ma, Celia M.T. Greenwood, Andrew D. Paterson, and Shelley B. Bull -- Single marker association analysis for unrelated samples / Gang Zheng, Ao Yuan, Qizhai Li, and Joseph L. Gastwirth -- Single marker family-based association analysis conditional on parental information / Ren-Hua Chung, Daniel D. Kinnamon, and Eden R. Martin -- Single marker family-based association analysis not conditional on parental information / Junghyun Namkung and Sungho Won -- Calibrating population stratification in association analysis / Huaizhen Qin and Xiaofeng Zhu -- Cross-phenotype association analysis using summary statistics from GWAS / Xiaoyin Li and Xiaofeng Zhu -- Haplotype inference / Sunah Song, Xin Li, and Jing Li -- Multi-SNP haplotype analysis methods for association analysis / Daniel O. Stram -- Analysis of ethnic mixtures / Xiaofeng Zhu and Heming Wang -- Detecting multiethnic rare variants / Weiwei Ouyang, Xiaofeng Zhu, and Huaizhen Qin -- Identifying gene interaction networks / Danica Wiredja and Gurkan Bebek -- Structural equation modeling / Catherine M. Stein, Nathan J. Morris, Noemi B. Hall, and Nora L. Nock -- Mendelian randomization / Sandeep Grover, Fabiola Del Greco M., Catherine M. Stein, and Andreas Ziegler -- Preprocessing and quality control for whole-genome sequences from the illumina HiSeq X platform / Marvin N. Wright, Damian Gola, and Andreas Ziegler -- Processing and analyzing human microbiome data / Xuan Zhu, Jian Wang, Cielito Reyes-Gibby, and Sanjay Shete.
Summary:
The aim of this volume is to make computer programs for analyzing human genetic data more easily accessible to the beginner.
Series:
Methods in molecular biology, 1064-3745 ; 1666 Springer protocols, 1949-2448
This resource is supported by the Institute of Museum and Library Services under the provisions of the Library Services and Technology Act as administered by State Library of Iowa.