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04301aam a2200385 i 4500 001 5F843AE0F69E11E78A00251D97128E48 003 SILO 005 20180111010238 008 160630t20162016nyua b 001 0deng 010 $a 2016933669 020 $a 1493935763 020 $a 9781493935765 035 $a (OCoLC)932095835 040 $a NLM $b eng $e rda $c NLM $d YDXCP $d BTCTA $d OCLCF $d STF $d GSU $d OCLCO $d YDX $d NUI $d UtOrBLW $d SILO 042 $a pcc 245 00 $a Statistical genomics : $b methods and protocols / $c edited by Ewy MatheÌ, Sean Davis. 264 1 $a New York : $b Humana Press, $c [2016] 300 $a xi, 418 pages : $b illustrations (some color) ; $c 26 cm. 490 1 $a Methods in molecular biology, $x 1064-3745 ; $v 1418 490 1 $a Springer protocols, $x 1949-2448 504 $a Includes bibliographical references and index. 505 00 $t It's DE-licious : a recipe for differential expression analyses of RNA-seq experiments using quasi-likelihood methods in edgeR / $r Aaron T.L. Lun, Yunshun Chen, and Gordon K. Smyth. $t Integrative exploratory analysis of two or more genomic datasets / $r Chen Meng and Aedin Culhane -- $t Study design for sequencing studies / $r Loren A. Honaas, Naomi S. Altman, and Martin Krzywinski -- $t Genomic annotation resources in R/Bioconductor / $r Marc R.J. Carlson, HerveÌ PageÌs, Sonali Arora, Valerie Obenchain, and Martin Morgan -- $t The gene expression omnibus database / $r Emily Clough and Tanya Barrett -- $t A practical guide to The Cancer Genome Atlas (TCGA) / $r Zhining Wang, Mark A. Jensen, and Jean Claude Zenklusen -- $t Working with oligonucleotide arrays / $r Benilton S. Carvalho -- $t Meta-analysis in gene expression studies / $r Levi Waldron and Markus Riester -- $t Practical analysis of genome contact interaction experiments / $r Mark A Carty and Olivier Elemento -- $t Quantitative comparison of large-scale DNA enrichment sequencing data / $r Matthias Lienhard and Lukas Chavez -- $t Variant calling from next generation sequence data / $r Nancy F. Hansen -- $t Genome-scale analysis of cell-specific regulatory codes using nuclear enzymes / $r Songjoon Baek and Myong-Hee Sung -- $t NGS-QC generator : a quality control system for ChIP-seq and related deep sequencing-generated datasets / $r Marco Antonio Mendoza-Parra, Mohamed-Ashick M. Saleem, Matthias Blum, Pierre-Etienne Cholley, and Hinrich Gronemeyer -- $t Operating on genomic ranges using BEDOPS / $r Shane Neph, Alex P. Reynolds, M. Scott Kuehn, and John A. Stamatoyannopoulos -- $t GMAP and GSNAP for genomic sequence alignment : enhancements to speed, accuracy, and functionality / $r Thomas D. Wu, Jens Reeder, Michael Lawrence, Gabe Becker, and Matthew J. Brauer -- $t Visualizing genomic data using Gviz and Bioconductor / $r Florian Hahne and Robert Ivanek -- $t Introducing machine learning concepts with WEKA / $r Tony C. Smith and Eibe Frank -- $t Experimental design and power calculation for RNA-seq experiments / $r Zhijin Wu and Hao Wu -- $t It's DE-licious : a recipe for differential expression analyses of RNA-seq experiments using quasi-likelihood methods in edgeR / $r Aaron T.L. Lun, Yunshun Chen, and Gordon K. Smyth. 520 $a This volume expands on statistical analysis of genomic data by discussing cross-cutting groundwork material, public data repositories, common applications, and representative tools for operating on genomic data. 650 0 $a Genomics $x Statistical methods $v Laboratory manuals. 650 12 $a Genomics $x statistics & numerical data. $0 https://id.nlm.nih.gov/mesh/D023281Q000706 650 12 $a Data Interpretation, Statistical. $0 https://id.nlm.nih.gov/mesh/D003627 650 22 $a Databases, Genetic $x statistics & numerical data. $0 https://id.nlm.nih.gov/mesh/D030541Q000706 700 1 $a Mathe, Ewy A., $e editor. $0 http://id.loc.gov/authorities/names/no2010168764 700 1 $a Davis, Sean $c (Cancer specialist), $e editor. $0 http://id.loc.gov/authorities/names/nb2016012015 773 18 $w 990001282000202771 $g 1418 830 0 $a Methods in molecular biology (Clifton, N.J.) ; $v v. 1418. $x 1064-3745 $0 http://id.loc.gov/authorities/names/n92002874 830 0 $a Springer protocols (Series). $x 1949-2448 $0 http://id.loc.gov/authorities/names/no2008180772 941 $a 1 952 $l OVUX522 $d 20180111044554.0 956 $a http://locator.silo.lib.ia.us/search.cgi?index_0=id&term_0=5F843AE0F69E11E78A00251D97128E48Initiate Another SILO Locator Search