Subject index. Foreword -- Gene control. Rick Young -- Didier Trono -- Visualizing the HoxD gene cluster at the nanoscale level / Pierre J. Fabre, Alexander Benke, Suliana Manley, and Denis Duboule -- Transcriptional enhancers: bridging the genome and phenome / Bing Ren and Feng Yue -- Regulatory principles governing tissue specificity of developmental enhancers / Emma K. Farley, Katrina M. Olson, and Michael S. Levine -- The importance of controlling transcription elongation at coding and noncoding RNA loci / Benjamin S. Scruggs and Karen Adelman -- Chromatin domains and nuclear position. Regulatory domains and their mechanisms / Nezha S. Benabdallah and Wendy A. Bickmore -- Large-scale chromatin structure-function relationships during the cell cycle and development: insights from replication timing / Vishnu Dileep, Juan Carlos Rivera-Mulia, Jiao Sima, and David M. Gilbert -- Prenucleosomes and active chromatin / Mai T. Khuong, Jia Fei, Haruhiko Ishii, and James T. Kadonaga -- HIPMap: a high-throughput imaging method for mapping spatial gene positions / Sigal Schachar, Gianluca, Pegoraro, and Tom Misteli -- Genome organization and chromosome architecture / Giorgio Bernardi -- Genome stability. A system to study aneuploidy in vivo / Sarah J. Pfau and Angelika Amon -- Resolution of recombination intermediates: mechanisms and regulation / Stephen C. West, Miguel G. Blanco, Ying Wait Chan, Joao Matos, Shriparna Sarbajna, and Haley D.M. Wyatt -- 21st century genetics: mass spectrometry of yeast telomerase / Kah Wai Lin and Virginia A. Zakian -- From mutational mechanisms in single cells to mutational patterns in cancer genomes / Cheng-Zhong Zhang and David Pellman -- The evolution of tumors in mice and humans with germline p53 mutations / Arnold J. Levine, Chang S. Chan, Crissy Dudgeon, Anna Puzio-Kuter, and Pierre Hainaut -- Germ cells and early development. Mechanism and reconstitution in vitro of germ cell development in mammals / Kazuki Kurimoto and Mitinori Saitou -- Erase-maintain-establish: natural reprogramming of the mammalian epigenome / Milena Leseva, Barbara B. Knowles, Daniel M. Messerschmidt, and Davor Solter -- Regulation of reprogramming and cellular plasticity through histone exchange and histone variant incorporation / Xavier Gaume and Maria-Elena Torres-Padilla -- ZFP57 and the targeted maintenance of postfertilization genomic imprints / Nozomi Takahashi, Dionne Gray, Ruslan Strogantsev, Angela Noon, Celia Delahaye, William C. Skarnes, Peri H. Tate, and Anne C. Ferguson-Smith -- Embryonic stem cells and development. Biological networks governing the acquisition, maintenance and dissolution of pluripotency: insights from functional genomics approaches / Kevin Andrew Uy Gonzales and Huck-Hui Ng -- Monitoring dynamics of DNA methylation at single-cell resolution during development and disease / Yonatan Stelzer and Rudolf Jaenisch -- Perturbing chromatin structure to understand mechanisms of gene expression / Caroline R. Bartman and Gerd A. Blobel -- Mechanisms underlying the selection and function of macrophage-specific enhancers / Verena M. Link, David Gosselin, and Christopher K. Glass -- Metabolism and signaling. Clock-talk: interactions between central and peripheral circadian oscillators in mammals / Ueli Schibler, Ivana Gotic, Camille Saini, Pascal Gos, Thomas Curie, Yann Emmenegger, Flore Sinturel, Pauline Gosselin, Alan Gerber, Fabienne Fleury-Olela, Gianpaolo Rando, Maud Demarque, and Paul Franken -- Dissecting the rev-erba cistrome and the mechanisms controlling circadian transcription in liver / Bin Fang and Mitchell A. Lazar -- Modulating the genomic programming of adipocytes / Anne Loft, Søren Fisker Schmidt, and Susanne Mandrup -- Targeting transcriptional and epigenetic reprogramming in stromal cells in fibrosis and cancer / Nasun Hah, Mara H. Sherman, Ruth T. Yu, Michael Downes, and Ronald M. Evans -- Regulation of RORyt in inflammatory lymphoid cell differentiation / Wendy Huang and Dan R. Littman -- Evolution. How transcription networks evolve and produce biological novelty / Isabel Nocedal and Alexander D. Johnson -- The African turquoise killifish: a model for exploring vertebrate aging and diseases in the fast lane / Itamar Harel and Anne Brunet -- Transposable elements, polydactyl proteins, and the genesis of human-specific transcription networks / Didier Trono -- Dorcas Cummings lecture. Svante Pääbo -- Conversations at the symposium. Geneviève Almouzni -- Angelika Amon -- Julius Brennecke -- Emmanuelle Charpentier -- Job Dekker -- Titia de Lange -- Jennifer Doudna -- Denis Duboule -- Ron Evans -- Anne Ferguson-Smith -- Edith Heard -- David Kingsley -- Arnold Levine -- Susan Lindquist -- Dan Littman -- Richard Morimoto -- David Page -- Wolf Reik -- Bing Ren -- Ueli Schibler -- Davor Solter -- Alexander Tarakhovsky -- Joanna Wysocka -- Rick Young -- Author index -- Subject index.
Series:
Cold Spring Harbor symposia on quantitative biology, 0091-7451 ; volume 80
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