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Title:

Multiple sequence alignment methods / edited by David J. Russell.

Publisher:

Humana Press,

Copyright Date:

2014

Description:

xii, 287 pages : illustrations (some color) ; 26 cm.

Subject:

Sequence alignment (Bioinformatics)--Laboratory manuals.
Computational biology--Laboratory manuals.
Sequence Alignment--methods--Laboratory Manuals.
Computational Biology--Laboratory Manuals.
Sequence Analysis--Laboratory Methods.

Other Authors:

Russell, David James, editor.
Springer Science+Business Media, copyright holder.

Notes:

Includes bibliographical references and index.

Contents:

MSACompro : improving multiple protein sequence alignment by predicted structural features / Xin Deng and Jianlin Cheng. Heuristic alignment methods / Osamu Gotoh -- Objective functions / Haluk Doǧan and Hasan H. Otu -- Who watches the watchmen? An appraisal of benchmarks for multiple sequence alignment / Stefano Iantorno [and four others] -- BLAST and FASTA similarity searching for multiple sequence alignment / William R. Pearson -- Clustal omega, accurate alignment of very large numbers of sequences / Fabian Sievers and Desmond G. Higgins -- T-coffee : tree-based consistency objective function for alignment evaluation / Cedrik Magi [and seven others] -- MAFFT : iterative refinement and additional methods / Kazutaka Katoh and Daron M. Standley -- Multiple sequence alignment using probcons and probalign / Usman Roshan -- Phylogeny-aware alignment with PRANK / Ari Loytynoja -- GramAlign : fast alignment driven by grammar-based phylogeny / David J. Russell -- Multiple sequence alignment with DIALIGN / Burkhard Morgenstern -- PicXAA : a probabilistic scheme for finding the maximum expected accuracy alignment of multiple biological sequences / Sayed Mohammad Ebrahim Sahraeian and Byung-Jun Yoon -- Multiple protein sequence alignment with MSAProbs / Yongchao Liu and Bertil Schmidt -- Large-scale multiple sequence alignment and tree estimation using SATe / Kevin Liu and Tandy Warnow -- PRALINE : a versatile multiple sequence alignment toolkit / Punto Bawono and Jaap Heringa -- PROMALS3D : multiple protein sequence alignment enhanced with evolutionary and three-dimensional structural information / Jimin Pei and Nick V. Grishin -- MSACompro : improving multiple protein sequence alignment by predicted structural features / Xin Deng and Jianlin Cheng.

Series:

Methods in molecular biology, 1064-3745 ; 1079
Springer protocols, 1949-2448

ISBN:

9781627036450
1627036458

OCLC:

(OCoLC)847126040

LCCN:

2013947475

Locations:

OVUX522 -- University of Iowa Libraries (Iowa City)