Basics of nucleic acid structure / B. Schneider [and others] -- Using AMBER to simulate DNA and RNA / T.E. Cheatham and David A. Case -- Theoretical studies of nucleic acids and nucleic acid-protein complexes using CHARMM / A. MacKerell [and others] -- Continuum solvent models to study the structure and dynamics of nucleic acids and complexes with ligands / M. Zacharias -- Data mining of molecular dynamic trajectories of nucleic acids / M. Orozco [and others] -- Enhanced sampling methods for atomistic simulation of nucleic acids / C. Kelso [and others] -- Modeling DNA deformation / P. Varnai [and others] -- Molecular dynamics simulations and free energy calculations on protein-nucleic acid complexes / D. Beveridge [and others] -- DNA simulation benchmarks as revealed by x-ray structures / W. Olson [and others] -- RNA : The cousin left behind becomes a star / T. Schlick -- Molecular dynamics simulations of RNA systems : Importance of the initial conditions / P. Auffinger -- Molecular dynamics simulations of nucleic acids / N. Spackova [and others] -- Using computer simulations to study decoding by the ribosome / K. Sanbonmatsu -- Base stacking and base pairing / J. Sponer [and others] -- Interaction of metal cations with nucleic acids and their building units / J.E. Sponer [and others] -- Proton transfer in DNA base pairs / J. Bertran [and others] -- Comparative study of quantum mechanical methods related to nucleic acid bases: Electronic spectra, excited state structures and interations / M.K. Shukla [and others] -- Substituent effects on hydrogen bonds in DNA / C. Fonseca Guerra [and others] -- Computational modeling of charge transfer in DNA / A.A. Voityuk -- Quantum chemical calculations of NMR parameters / W. Schofberger [and others] -- Importance of entropic factors in DNA behaviour : Insights from simulations / S.A. Harris [and others] -- Sequence-dependent harmonic deformability of nucleic acids inferred from atomistic molecular dynamics / F. Lankas -- Simulation of equilibrium and dynamic properties of large DNA molecules / A. Vologodskii -- Chromatin simulations / J. Langowski [and others].
Series:
Challenges and advances in computational chemistry and physics ; 2
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