ReCombinatorics : the algorithmics of ancestral recombination graphs and explicit phylogenetic networks / Dan Gusfield ; with contributions from Charles H. Langley, Yun S. Song and Yufeng Wu.
Includes bibliographical references (pages 533-564) and index.
Contents:
Introduction -- Trees first -- A deeper introduction to recombination and networks -- Exploiting recombination -- First bounds -- Fundamental combinatorial structure and tools -- First uses of fundamental structure -- Galled trees -- General ARG contruction methods -- The History and Forest lower bounds -- Conditions to guarantee a fully decomposed MinARG -- Tree and ARG-based haplotyping -- Tree and ARG-based association mapping -- Extensions and connections -- A short introduction to integer linear programming.
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