Spike-in normalization of ChIP data using DNA-DIG-antibody complex / Andrea B. Eberle. Considerations on experimental design and data analysis of chromatin immunoprecipitation experiments / Antonio Jordan-Pla and Neus Visa -- How to combine ChIP with qPCR / Patrik Asp -- Analysis of protein-DNA interaction by chromatin immunoprecipitation and DNA tiling microarray (ChIP-on-chip) / Hui Gao and Chunyan Zhao -- Chromatin immunoprecipitation from mouse embryonic tissue or adherent cells in culture, followed by next-generation sequencing / Mario A.F. Soares and Diogo S. Castro -- Chromatin RNA immunoprecipitation (ChRIP) / Tanmoy Mondal, Santhilal Subhash, and Chandrasekhar Kanduri -- DNA accessibility by MNase digestions / Ann-Kristin Ostlund Farrants -- Characterization of the nucleosome landscape by micrococcal nuclease-sequencing (MNase-seq) / Wieteke Anna Maria Hoeijmakers and Richard Bartfai -- ChIP-re-ChIP : co-occupancy analysis by sequential chromatin immunoprecipitation / Timothy V. Beischlag, Gratien G. Prefontaine, and Oliver Hankinson -- Sm-ChIPi : single-molecule chromatin immunoprecipitation imaging / Roubina Tatavosian and Xiaojun Ren -- Chromatin immunoprecipitation of skeletal muscle tissue / Amarjit Saini and Carl Johan Sundberg -- Chromatin immunoprecipitation assay in the hyperthermoacidophilic crenarchaeon, Sulfolobus acidocaldarius / Kun Wang and Ann-Christin Lindas -- Using intra-ChIP to measure protein-DNA interactions in intracellular pathogens / Brett R. Hanson and Ming Tan -- Native chromatin immunoprecipitation-sequencing (ChIP-Seq) from low cell numbers / Teodora Ribarska and Gregor D. Gilfillan -- MOBE-ChIP : probing cell type-specific binding through large-scale chromatin immunoprecipitation / Shenqi Wang and On Sun Lau -- Multiplexed ChIP-Seq using direct nucleosome barcoding : a tool for high-throughput chromatin analysis / Christophe D. Chabbert, Sophie H. Adjalley, Lars M. Steinmetz, and Vicent Pelechano -- Analysis of ChIP-seq data in R/Bioconductor / Ines de Santiago and Thomas Carroll -- Spike-in normalization of ChIP data using DNA-DIG-antibody complex / Andrea B. Eberle.
Series:
Springer protocols, 1949-2448 Methods in molecular biology, 1064-3745 ; 1689
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